Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs117089739 chr10:69794481 A/T 0 177 25.87 18.2 2.28 KM Plot
PCPG rs11709043 chr3:115114846 A/C 0.000364 178 24.7 18 25.97 KM Plot
PCPG rs11709395 chr3:195808478 C/G 2.45E-11 172 24.52 32.92 6.87 KM Plot
PCPG rs11710292 chr3:53117798 T/C 7.77E-6 175 25.4 26.05 11.78 KM Plot
PCPG rs11710707 chr3:52975916 A/G 6.56E-6 176 25.17 26.57 11.78 KM Plot
PCPG rs117109244 chr10:69599355 C/A 0 173 25.87 18.2 2.28 KM Plot
PCPG rs11711014 chr3:195820780 C/A 2.05E-7 174 24.52 32.92 6.87 KM Plot
PCPG rs11711773 chr3:53040456 C/A 5.97E-6 177 25.17 26.92 11.78 KM Plot
PCPG rs11712922 chr3:195720932 A/G 1.62E-5 173 24.52 31.47 13.38 KM Plot
PCPG rs117131627 chr10:69806724 A/C 0 177 25.87 18.2 2.28 KM Plot
PCPG rs11713206 chr3:52999243 A/G 6.73E-6 176 25.08 30.52 11.78 KM Plot
PCPG rs11713859 chr3:53042080 C/A 6.09E-6 177 25.28 26.57 11.78 KM Plot
PCPG rs11714037 chr3:52971680 C/A 6.56E-6 176 25.17 26.57 11.78 KM Plot
PCPG rs11714876 chr3:53101640 C/G 9.99E-6 178 11.78 30.93 24.7 KM Plot
PCPG rs11714902 chr3:53101544 G/C 6.45E-6 177 25 26.92 11.78 KM Plot